DeepGOWeb SPARQL Endpoint
The SPARQL endpoint allows to call function prediction model in SPARQL query. We provide a custom function called "deepgo" which takes protein sequence and prediction threshold as an input and returns predicted functions along with the subontology, label and prediction score. The output can be downloaded in different formats such as json, xml, csv or text.
Example queries:
- Example 1: Simple example query
- Example 2: Federated query which runs deepgo on two sequences from UniProt SPARQL Endpoint